Index _ | A | C | D | E | F | G | H | I | M | N | P | R | S | T | U | V | W _ __del__() (mesher.meshfunc.VoroBuild method) _addPitMicroTilt() (sed.sedplex.SEDMesh method) _addTime() (tools.inputparser.ReadYaml method) _advectorIIOE2() (mesher.tectonics.Tectonics method) _advectPlates() (mesher.tectonics.Tectonics method) _advectStrati() (mesher.tectonics.Tectonics method) _assembleDiffMat() (sed.hillslope.hillSLP method) _assembleDiffMatCSR() (sed.hillslope.hillSLP method) _bottomUpDelta() (sed.sedplex.SEDMesh method) _build_ed_snes() (eroder.nlSPL.nlSPL method) _build_soil_snes() (eroder.soilSPL.soilSPL method) _buildAdvecMat() (mesher.tectonics.Tectonics method) _buildDHGrid() (tools.addprocess.GridProcess method) _buildDiffMat() (sed.hillslope.hillSLP method) _buildFlowDirection() (flow.flowplex.FAMesh method) _buildIceSeries() (tools.inputparser.ReadYaml method) _buildMesh() (mesher.unstructuredmesh.UnstMesh method) _buildPitDataframe() (flow.pitfilling.PITFill method) _buildRegGrid() (tools.addprocess.GridProcess method) _checkMap() (tools.inputparser.ReadYaml method) _cmptFlexGlobal() (tools.addprocess.GridProcess method) _compute_edges_cells() (mesher.meshfunc.VoroBuild method) _compute_integral_x() (mesher.meshfunc.VoroBuild method) _compute_surface_areas() (mesher.meshfunc.VoroBuild method) _coupledEDSystem() (eroder.SPL.SPL method) _cptFlex2D() (tools.addprocess.GridProcess method) _createOutputDir() (tools.outmesh.WriteMesh method) _defineErofactor() (tools.inputparser.ReadYaml method) _defineEvap() (tools.inputparser.ReadYaml method) _defineRain() (tools.inputparser.ReadYaml method) _defineTectonics() (tools.inputparser.ReadYaml method) _depMarineSystem() (sed.seaplex.SEAMesh method) _depthPorosity() (sed.stratplex.STRAMesh method) _depthPorosityDual() (sed.stratplex.STRAMesh method) _dh2unstr() (tools.addprocess.GridProcess method) _diff_nl_monitor() (sed.hillslope.hillSLP method) _diffuseImplicit() (sed.hillslope.hillSLP method) _diffuseImplicitPicard() (sed.hillslope.hillSLP method) _diffuseLargePit() (sed.sedplex.SEDMesh method) _diffuseOcean() (sed.hillslope.hillSLP method) _dirFlats() (flow.pitfilling.PITFill method) _distanceCoasts() (sed.seaplex.SEAMesh method) _distOcean() (sed.seaplex.SEAMesh method) _distributeDownstream() (flow.flowplex.FAMesh method) _distributeSediment() (sed.sedplex.SEDMesh method) _eroMats() (eroder.SPL.SPL method) _evalFunctionMardDiff() (sed.hillslope.hillSLP method) _evalFunctionSoil() (eroder.soilSPL.soilSPL method) _evalJacobianMardDiff() (sed.hillslope.hillSLP method) _evalJacobianSoil() (eroder.soilSPL.soilSPL method) _evalSolutionMardDiff() (sed.hillslope.hillSLP method) _evalSolutionSoil() (eroder.soilSPL.soilSPL method) _extraDomain() (tools.inputparser.ReadYaml method) _extraDomain2() (tools.inputparser.ReadYaml method) _extraFlex() (tools.inputparser.ReadYaml method) _extraHillslope() (tools.inputparser.ReadYaml method) _extraIce() (tools.inputparser.ReadYaml method) _extraOrography() (tools.inputparser.ReadYaml method) _extraProvenance() (tools.inputparser.ReadYaml method) _extraStrata() (tools.inputparser.ReadYaml method) _fillFromEdges() (flow.pitfilling.PITFill method) _fillZeroPorosity() (sed.stratplex.STRAMesh method) _findPts2Reduce() (mesher.tectonics.Tectonics method) _form_jacobian() (eroder.nlSPL.nlSPL method) _form_residual() (eroder.nlSPL.nlSPL method) _form_residual_ed() (eroder.nlSPL.nlSPL method) _form_residual_nl_hillslope() (sed.hillslope.hillSLP method) _form_residual_soil() (eroder.soilSPL.soilSPL method) _gatherGlobalOnRoot() (mesher.unstructuredmesh.UnstMesh method) _generateVTKmesh() (mesher.unstructuredmesh.UnstMesh method) _get_boundary() (mesher.unstructuredmesh.UnstMesh method) _get_param() (tools.inputparser.ReadYaml method) _getEroDepRate() (eroder.SPL.SPL method) _getEroDepRateNL() (eroder.nlSPL.nlSPL method) _getEroDepRateSoil() (eroder.soilSPL.soilSPL method) _getPitParams() (flow.pitfilling.PITFill method) _getSedFlux() (sed.sedplex.SEDMesh method) _getTe() (tools.inputparser.ReadYaml method) _glacialAbrasion() (eroder.SPL.SPL method) _glacialLateralErosion() (flow.iceplex.IceMesh method) _glacialMeltwater() (flow.iceplex.IceMesh method) _glacialTillStrata() (flow.iceplex.IceMesh method) _globalCoastsTree() (sed.seaplex.SEAMesh method) _hillSlope() (sed.hillslope.hillSLP method) _hillSlopeNL() (sed.hillslope.hillSLP method) _iceFlowMFD() (flow.iceplex.IceMesh method) _iceGeomField() (tools.inputparser.ReadYaml method) _iceMassBalance() (flow.iceplex.IceMesh method) _identifyPitInlets() (sed.sedplex.SEDMesh method) _initProvenance() (sed.stratplex.STRAMesh method) _isKeyinFile() (tools.inputparser.ReadYaml method) _loadIceMap() (tools.inputparser.ReadYaml method) _make_reasons() (flow.flowplex.FAMesh method) _makeDiffusionKSP() (sed.hillslope.hillSLP method) _marineFineFraction() (sed.seaplex.SEAMesh method) _marineProvFraction() (sed.seaplex.SEAMesh method) _matOcean() (sed.seaplex.SEAMesh method) _matrix_build() (flow.flowplex.FAMesh method) _matrix_build_diag() (flow.flowplex.FAMesh method) _matrixIceFlow() (flow.iceplex.IceMesh method) _meshfrom_cell_list() (mesher.unstructuredmesh.UnstMesh method) _meshStructure() (mesher.unstructuredmesh.UnstMesh method) _monitor() (eroder.nlSPL.nlSPL method) _monitorsoil() (eroder.soilSPL.soilSPL method) _moveDownstream() (sed.sedplex.SEDMesh method) _offsetGlobal() (flow.pitfilling.PITFill method) _outputMesh() (tools.outmesh.WriteMesh method) _outputStrat() (tools.outmesh.WriteMesh method) _performFilling() (flow.pitfilling.PITFill method) _pitFineFraction() (sed.sedplex.SEDMesh method) _pitInformation() (flow.pitfilling.PITFill method) _pitProvFraction() (sed.sedplex.SEDMesh method) _potentialLakeEvap() (flow.flowplex.FAMesh method) _readAdvectionData() (mesher.tectonics.Tectonics method) _readCompaction() (tools.inputparser.ReadYaml method) _readDomain() (tools.inputparser.ReadYaml method) _readErofactor() (tools.inputparser.ReadYaml method) _readErosionDeposition() (mesher.unstructuredmesh.UnstMesh method) _readFlex() (tools.inputparser.ReadYaml method) _readHillslope() (tools.inputparser.ReadYaml method) _readIce() (tools.inputparser.ReadYaml method) _readOrography() (tools.inputparser.ReadYaml method) _readOut() (tools.inputparser.ReadYaml method) _readRain() (tools.inputparser.ReadYaml method) _readSealevel() (tools.inputparser.ReadYaml method) _readSoilInfo() (tools.inputparser.ReadYaml method) _readSPL() (tools.inputparser.ReadYaml method) _readTectonics() (tools.inputparser.ReadYaml method) _readTeMap() (tools.inputparser.ReadYaml method) _readTime() (tools.inputparser.ReadYaml method) _regInterp() (tools.addprocess.GridProcess method) _resolveIceField() (mesher.unstructuredmesh.UnstMesh method) _restartUpdate() (tools.inputparser.ReadYaml method) _routeTill() (flow.iceplex.IceMesh method) _save_DMPlex_XMF() (tools.outmesh.WriteMesh method) _save_XDMF() (tools.outmesh.WriteMesh method) _set_DMPlex_boundary_points() (mesher.unstructuredmesh.UnstMesh method) _solve_KSP() (flow.flowplex.FAMesh method) _solve_KSP2() (flow.flowplex.FAMesh method) _solveNL() (eroder.nlSPL.nlSPL method) _solveNL_ed() (eroder.nlSPL.nlSPL method) _solveSmooth() (sed.hillslope.hillSLP method) _solveSoil() (eroder.soilSPL.soilSPL method) _sortingPits() (flow.pitfilling.PITFill method) _spillCoords() (sed.sedplex.SEDMesh method) _storeTectonics() (tools.inputparser.ReadYaml method) _surfaceComposition() (sed.stratplex.STRAMesh method) _surfaceK() (sed.stratplex.STRAMesh method) _surfaceLithoD() (sed.stratplex.STRAMesh method) _surfaceLithoK() (sed.stratplex.STRAMesh method) _transferIDs() (flow.pitfilling.PITFill method) _unstr2dh() (tools.addprocess.GridProcess method) _updateEroFactor() (mesher.unstructuredmesh.UnstMesh method) _updateEvap() (mesher.unstructuredmesh.UnstMesh method) _updateIce() (mesher.unstructuredmesh.UnstMesh method) _updateRain() (mesher.unstructuredmesh.UnstMesh method) _updateSinks() (sed.sedplex.SEDMesh method) _updateStratInfo() (mesher.tectonics.Tectonics method) _updateTe() (tools.addprocess.GridProcess method) _varAdvector() (mesher.tectonics.Tectonics method) A angles() (mesher.meshfunc.VoroBuild method) applyFlexure() (tools.addprocess.GridProcess method) applyForces() (mesher.unstructuredmesh.UnstMesh method) applyTectonics() (mesher.unstructuredmesh.UnstMesh method) C ce_ratios_per_interior_edge() (mesher.meshfunc.VoroBuild method) cell_barycenters() (mesher.meshfunc.VoroBuild method) cell_centroids() (mesher.meshfunc.VoroBuild method) cell_circumcenters() (mesher.meshfunc.VoroBuild method) cell_partitions() (mesher.meshfunc.VoroBuild method) circumradius() (mesher.meshfunc.VoroBuild method) compute_curl() (mesher.meshfunc.VoroBuild method) control_volume_centroids() (mesher.meshfunc.VoroBuild method) control_volumes() (mesher.meshfunc.VoroBuild method) cptOrography() (tools.addprocess.GridProcess method) create_edges() (mesher.meshfunc.VoroBuild method) D deposeStrat() (sed.stratplex.STRAMesh method) destroy() (model.Model method) destroy_DMPlex() (mesher.unstructuredmesh.UnstMesh method) diffuseSoil() (eroder.soilSPL.soilSPL method) E edge_gid_to_edge_list() (mesher.meshfunc.VoroBuild method) edge_lengths() (mesher.meshfunc.VoroBuild method) edges_cells() (mesher.meshfunc.VoroBuild method) elevStrat() (sed.stratplex.STRAMesh method) erodepSPL() (eroder.SPL.SPL method) erodepSPLnl() (eroder.nlSPL.nlSPL method) erodepSPLsoil() (eroder.soilSPL.soilSPL method) erodeStrat() (sed.stratplex.STRAMesh method) F face_partitions() (mesher.meshfunc.VoroBuild method) FAMesh (class in flow.flowplex) fillElevation() (flow.pitfilling.PITFill method) fillIceElevation() (flow.pitfilling.PITFill method) flowAccumulation() (flow.flowplex.FAMesh method) G getCompaction() (sed.stratplex.STRAMesh method) getHillslope() (sed.hillslope.hillSLP method) getTectonics() (mesher.tectonics.Tectonics method) glacialTill() (flow.iceplex.IceMesh method) goSPL module GridProcess (class in tools.addprocess) H hillSLP (class in sed.hillslope) I iceAccumulation() (flow.iceplex.IceMesh method) IceMesh (class in flow.iceplex) initVoronoi() (mesher.meshfunc.VoroBuild method) inradius() (mesher.meshfunc.VoroBuild method) is_boundary_facet() (mesher.meshfunc.VoroBuild method) is_boundary_node() (mesher.meshfunc.VoroBuild method) is_interior_node() (mesher.meshfunc.VoroBuild method) M mark_boundary() (mesher.meshfunc.VoroBuild method) matrixFlow() (flow.flowplex.FAMesh method) Model (class in model) module goSPL N nlSPL (class in eroder.nlSPL) P PITFill (class in flow.pitfilling) R readData() (tools.outmesh.WriteMesh method) readStratLayers() (sed.stratplex.STRAMesh method) ReadYaml (class in tools.inputparser) runProcesses() (model.Model method) S seaChange() (sed.seaplex.SEAMesh method) SEAMesh (class in sed.seaplex) sedChange() (sed.sedplex.SEDMesh method) SEDMesh (class in sed.sedplex) signed_cell_areas() (mesher.meshfunc.VoroBuild method) soilSPL (class in eroder.soilSPL) SPL (class in eroder.SPL) STRAMesh (class in sed.stratplex) stratalRecord() (sed.stratplex.STRAMesh method) surface_areas() (mesher.meshfunc.VoroBuild method) T Tectonics (class in mesher.tectonics) triangle_quality() (mesher.meshfunc.VoroBuild method) U UnstMesh (class in mesher.unstructuredmesh) updatePaleoZ() (mesher.tectonics.Tectonics method) updateSoilThickness() (eroder.soilSPL.soilSPL method) V visModel() (tools.outmesh.WriteMesh method) VoroBuild (class in mesher.meshfunc) W WriteMesh (class in tools.outmesh)
